writing  MBRS-RISE  Faculty Publications, 2006 - 2014

(Faculty RISE mentors underlined; RISE student co-authors identified in boldface)

Updated 03/25/15

  1. Walid M. Al-Ghoul , Margarita S. Kim , Nadeem Fazal , Anser C. Azim , Ashraf Ali (2014) Evidence for simvastatin anti-inflammatory actions based on quantitative analyses of NETosis and other inflammation / oxidation markers, Results in Immunology 4 (2014) 14–22.
  2. Poluektov, Oleg G., Jens Niklas, Kristy L. Mardis, Serge Beaupré, Mario Leclerc, Carmen Villegas, Sule Erten‐Ela et al. Electronic Structure of Fullerene Heterodimer in Bulk‐Heterojunction Blends. Advanced Energy Materials (2014).
  3. Pillers, M., Goss, V., & Lieberman, M. (2014). Electron-Beam Lithography and Molecular Liftoff for Directed Attachment of DNA Nanostructures on Silicon: Top-down Meets Bottom-up. Accounts of chemical research.DOI: 10.1021/ar500001e Publication Date (Web): April 9, 2014.
  4. Tesfaye M, Silverstein KAT, Nallu S, Wang L, Botanga CJ, et al. (2013) Spatio-Temporal Expression Patterns of Arabidopsis thaliana and Medicago truncatula Defensin-Like Genes. PLoS ONE 8(3): e58992. doi:10.1371/journal.pone.0058992.
  5. Fugate, B., Medrano, D., Gana, J. A., Abraha, A., & Cunningham, S. M. (2014). Medicago sativa L. β-Amylase Core Promoter has Motifs in Common with Arabidopsis Key Starch Degradation Genes. Journal of Plant Biochemistry & Physiology, 2:1 http://dx.doi.org/10.4172/2329-9029.1000124.
  6. Chenglong Yu, Rong Lucy He, Stephen S.-T.Yau (2014) Viral genome phylogeny based on Lempel–Zivcomplexity and Hausdorff distance, Journal of Theoretical Biology, 348 (2014) 12–20.
  7.  Tsuda K, Mine A, Bethke G, Igarashi D, Botanga CJ, et al. (2013) Dual Regulation of Gene Expression Mediated by Extended MAPK Activation and Salicylic Acid Contributes to Robust Innate Immunity in Arabidopsis thaliana. PLoS Genet 9(12): e1004015. doi:10.1371/journal.pgen.100401
  8. Chenglong Yu , Rong L. He,  and Stephen S.-T. Yau (2013) Protein sequence comparison based on K-string dictionary, Gene 529 (2013) 250–25
  9. Meyer, J. N., Mathew, M. T., Wimmer, M. A., & LeSuer, R. J. (2013). Effect of Tribolayer Formation on Corrosion of CoCrMo Alloys Investigated Using Scanning Electrochemical Microscopy. Analytical chemistry, 85(15), 7159-7166
  10. April C. Joice , Michael T. Harris, Elizabeth W. Kahney, Heidi C. Dodson, Andrew G. Maselli , Daniel C. Whitehead, James C. Morris (2013)  Exploring the mode of action of ebselen in Trypanosoma brucei hexokinase inhibition,  International Journal for Parasitology: Drugs and Drug Resistance 3 (2013) 154–160.
  11. Paul Griffin, Ruth Furukawa, Cleveland Piggott, Andrew Maselli and Marcus Fechheimer (2014)  Requirements for Hirano Body Formation, Eukaryotic Cell 2014, 13(5):625. DOI: 10.1128/EC.00044-14.
  12.  Ketur Darji, Cristina Miglis, Ashley Wardlow, and Ehab A Abourashed (2013) HPLC Determination of Isoflavone Levels in Osage Orange from the United States Midwest and South, J. Agric. Food Chem., 61(28) 6806-6811. DOI: 10.1021/jf400954m.
  13. Jens Niklas, Kristy L. Mardis, Brian P. Banks, Gregory M.  Grooms, Andreas Sperlich, Vladimir Dyakonov, Serge Beaupré, Mario Leclerc, Tao Xu, Luping Yuand Oleg G. Poluektov (2013) Highly-efficient charge separation and polaron delocalization in polymer–fullerene bulk-heterojunctions: a comparative multi-frequency EPR and DFT study, Phys. Chem. Chem. Phys., 2013,15, 9562-9574.
  14. Paul Serafin, Mohammad Newaz (2013) The Pharmacogenomic Consideration of Lipid Homeostasis: Role of Pharmacist in Ethical and Economic Consideration,  Pharmacology & Pharmacy, 2013, 4, 115-120 doi:10.4236/pp.2013.41017 Published Online January 2013.
  15. Goss, V.,  Brandt, S., & Lieberman, M. (2013). The Analog Atomic Force Microscope: Measuring, Modeling, and Graphing for Middle School. J. Chem. Educ.,2013,90(3), pp 358–360.  DOI:10.1021/ed200704j
  16. Haferkamp, B., Zhang, H., Lin, Y., Yeap, X., Bunce, A., Sharpe, J., & Xiang, J. (2012). BaxΔ2 Is a Novel Bax Isoform Unique to Microsatellite Unstable Tumors.  Journal of Biological Chemistry,287(41), 34722-34729.
  17. Christopher J. Botanga, Gerit Bethke, Zhong Chen, Daniel R. Gallie, Oliver Fiehn, and Jane Glazebrook (2012) Metabolite Profiling ofArabidopsisInoculatedwithAlternaria brassicicolaReveals that Ascorbate Reduces Disease Severity, Molecular Plant-Microbe Interactions,December 2012, Volume 25, Number 12, Pages 1628-1638. (DOI: http://dx.doi.org/10.1094/MPMI-07-12-0179-R)
  18. Jens Niklas, Kristy L. Mardis, Rakhim R. Rakhimov, Karen L. Mulfort, David M. Tiede, and Oleg G. Poluektov (2012) The Hydrogen Catalyst Cobaloxime: A Multifrequency EPR and DFT Study of Cobaloxime’s Electronic Structure, J. Phys. Chem. B,2012,116(9), pp 2943–2957.
  19. Julienne Kabreand, Robert J. LeSuer, (2012) Modeling Diffusion of Tin into the Mesoporous Titanium Dioxide Layer of a Dye-Sensitized Solar Cell Photoanode, J. Phys. Chem. C,2012,116(34), pp 18327–18333. DOI:10.1021/jp3061366
  20. Samuel P Bowen, Jay D Mancini, Vassilios Fessatidis,and Robert K Murawski (2012) Numerical estimates of the spectrum for anharmonic PT symmetric potentials, Physica Scripta, Volume 85 Number 6, DOI:10.1088/0031-8949/85/06/065005.
  21. Vassilios Fessatidis, Frank A. Corvino, Jay D. Mancini, William J. Massano,and Samuel P. Bowen (2012) Ground-state energy of a two level system with phonon coupling, Physics Letters A, Volume 376, Issue 4, 9 January 2012, Pages 573–578.
  22. Newaz, Mohammad; Oyekan, Adebato; Yousefipour, Zivar (2012) 104 G-Protein Coupled Receptor (Gpcr) Signalling in Spontaneously Hypertensive Rats (Shr): Modulation by Ppar[Gamma] Ligand Gw1929, Journal of Hypertension: September 2012, DOI: 10.1097/01.hjh.0000419928.48581.94.
  23. Abourashed, E. A., Mikell, J. R., & Khan, I. A. (2012). Bioconversion of silybin to phase I & II microbial metabolites with retained antioxidant activity. Bioorganic & Medicinal Chemistry Volume 20, Issue 9, 1 May 2012, Pages 2784–2788.
  24. El-Alfy, A.;Abourashed, E.;R. Matsumoto, R. (2012) Nature Against Depression (Review), Current Medicinal Chemistry, Volume 19,Number 14, May 2012 , pp. 2229-2241.
  25. Seale, S. M., Feng, Q., Agarwal, A. K., & El-Alfy, A. T. (2012). Neurobehavioral and transcriptional effects of acrylamide in juvenile rats. Pharmacology Biochemistry and Behavior,101(1), 77-84.
  26. Fazal, N., Shelip, A., Siddiqui, E., Ali, A., Azim, A. C. and Al-Ghoul, W. M. (2012), Differential effector responses by circulating/blood and tissue/peritoneal neutrophils following burn combined with Enterococcus faecalisinfection. FEMS Immunology & Medical Microbiology, 64:191–204. DOI:10.1111/j.1574-695X. 2011.00881.x
  27. Gerin, C.G, Madueke, I.C., Perkins, T., Hill, S., Smith, K., Haley, B., Allen, S.A., Garcia, R.P., Paunesku, T., Woloschak, G. (2011) Combination strategies for repair, plasticity and, regeneration using regulation of gene expression during the chronic phase after spinal cord injury. Synapse 2011, Jan 2011 [Epub ahead of print] [PMID: 21308793]
  28. Gerin, C. G., Smith, K., Hill, S., Hill, A., & Madueke, I. C.(2011)  Motor activity affects dopaminergic and noradrenergic systems of the dorsal horn of the rat lumbar spinal cord.Synapse, 65(12), 1282-1288.
  29. Abourashed EA; Galal AM; Shibl AM (2011) Antimycobacterial activity of ferutinin alone and in combination with antitubercular drugs against a rapidly growing surrogate of Mycobacterium tuberculosis. Natural Product Research[Nat Prod Res] 2011 Jul; Vol. 25 (12), pp. 1142-9. DOI: 10.1080/14786419.2010.481623 PMID: 21442547.
  30. Zivar Yousefipour, Adebayo Oyekan, Mohammad Newaz (2010) Interaction of oxidative stress, nitric oxide and peroxisome proliferator activated receptor γ in acute renal failure, Pharmacology & Therapeutics, Volume 125, Issue 3, March 2010, Pages 436–445.
  31.  Newaz, M; Yousefipour, Z;Oyekan, A (2010) Natriuretic and renoprotective effect of chronic oral neutral endopeptidase inhibition in acute renal failure, Renal Failure Vol. 32 (3), pp. 384-90.  DOI: 10.3109/08860221003611745   PMID: 20370457.
  32. Tiede, David M., Mardis, Kristy L.,  and Zuo, Xiaobing (2009), X-ray scattering combined with coordinate-based analyses for applications in natural and artificial photosynthesis, Photosynthesis Research, 102, 267-279.
  33. Biggs, P.; Jones, L., II; Lewis, G. (2009) An Autonomically-Healed PMMA Bone Cement: Influence of the Crystal Size of Grubbs’ Catalyst on Fracture Toughness and Polymerisation Rate. Int. J. Nano and Biomaterials, 2(6), 494-504.
  34. Lewis, G., Jones, L., II, Biggs, P. (2009) A Room-Temperature Autonomically-Healing PMMA Bone Cement: Influence of Composition on Fatigue Crack Propagation Rate. Int. Journal of Applied Biomaterials and Biomechanics, 7, 90-96.
  35. Reyes, J.F., Stone, K., Ramos, J., and Maselli, A. (2009) Formation of Hirano Bodies after Inducible Expression of a Modified Form of an Actin-Cross-linking Protein, Eukaryotic Cell, 8(6), 852-7. PMID: 19363062; PMCID: 2698299 .
  36. Mardis, K. L., Sutton, H., Zuo, X., Lindsey, J., and  Tiede, D. M. (2009) Solution-state conformational ensemble of a hexameric porphyrin array characterized using molecular dynamics and X-ray scattering. J. Phys. Chem. A, 113(11), 2516.
  37. Wallace LT and Erhart MA (2008). Recombination within mouse t haplotypes has replaced significant segments of t-specific DNA. Mammalian Genome 19 (4):263-271.
  38.  McKay, L. and  LeSuer, R. J. (2008) A mechanistic investigation of di-tert-butyl nitroxide using scanning electrochemical microscopy (SECM), Electrochimica Acta , 53, 8305
  39. Honson, Nicolette S., Jenson, Jordan R., Abraha, Aida,  Hall, Garth F., and Kuret, Jeff (2008) Small-molecule mediated neuroprotection in an in situ model of tauopathy, Neurotoxicity Res., 15; 48-59.
  40. Nkuku, Chiemela A. and LeSuer, Robert J. (2007) Electrochemistry in Deep Eutectic Solvents,  J. Phys. Chem., 46, 13271-13277.
  41. Bowen, Samuel, Fair, Joshlean, Richter, Robert, Biller, Jason, and participants of RISE-PREMAT-2004 (2007) Study of the Levels of Insoluble Mercury in the Soil of the Lake Calumet and South Chicago Area, Trans. Illinois Acad. of Science, 135-156.
  42. Maresso, AW; Wu, R; Kern, JW; Zhang, R; Janik, D; Missiakas, D; Duban, M-E; Joachimiak, A; and Schneewind, O. (2007) Activation of Inhibitors by Sortase Triggers Irreversible Modification Of The Active Site, J. Biol. Chem., 282, 23129-23139.
  43. Biggs, P.; Jones, L., II; Lewis, G. (2007) Incorporation of Microencapsulated Dicyclopentadiene into an Acrylic Bone Cement Matrix. PMSE Preprints, 2007, 96, 498.
  44. Bowen, S.P., Mancini, J.D., Fessatidis, V., and Grabiner, M. (2008) Why do electromagnetic pulses enhance bone growth? Ann. Biomed. Eng., 36(2):195-203. (Epub 2007 Nov 27.)
  45. Erhart MA, Kim T, Crews GM, Pandya A (2006). The Use of Unilateral PCR to Resolve Prominent Heteroduplexes Formed During PCR of the Mouse Microsatellite Locus D17Mit23. Molecular Biotechnology 33, 37-48.
  46. Fazal, Nadeem,  Raziuddin,  Syed, Khan, Mehdi and Al-Ghoul, Walid M. (2006) Antigen Presenting Cells (Apcs) From Thermally Injured and/or Septic Rats Modulate CD4+ T Cell Responses Of Naive Rat. Biochim Biophys Acta., 1762(1):46-53.
  47. Castro, R., Scott K., Jordan T., Evans B., Craig J., Peters E. L., and Swier, K. (2006) The Ultrastructure of the Parasitophrous Vacuole formed by Leishmania major. J. Parasitol., 92(6): 1162-1170.
  48. Mardis, K. L. (2006) Can configuration Entropy Losses Be Predicted from the Binding Affinities of Hydrogen-Bonded Complexes with Varying Numbers of Single Bonds? J. Phys. Chem. 110(2), 971.

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